STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3597Amino-acid ABC transporter, ATP-binding protein; Function experimentally demonstrated in the studied strain; transporter. (260 aa)    
Predicted Functional Partners:
PP_3595
Amino acid ABC transporter, membrane protein; Function experimentally demonstrated in the studied strain; transporter.
 
 0.991
PP_3594
Amino acid ABC transporter, membrane protein; Function experimentally demonstrated in the studied strain; transporter; Transportandbindingproteins : Amino acids, peptides and amines.
 
  0.990
sctS
Sulfur compound ABC transporter - permease subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transport and binding proteins.
 
 0.985
amaD
D-lysine oxidase; Function experimentally demonstrated in the studied strain; enzyme; Energymetabolism : Amino acids and amines.
  
  
 0.951
PP_0656
Putative Amino acid ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 0.949
gltK
Glutamate / aspartate ABC transporter - permease subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Aminoacidbiosynthesis : Aspartate family.
 
 0.923
PP_3592
Transcriptional regulator, RpiR family; Function experimentally demonstrated in the studied strain; regulator; Regulatory functions.
  
  
 0.907
PP_5023
Amino acid ABC transporter, permease protein.
 
 0.906
PP_4426
Amino acid ABC transporter, permease protein.
 
 0.901
PP_2119
Putative ABC efflux transporter, permease/ATP-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     
0.899
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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