Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_3607Homologs of previously reported genes of unknown function. (404 aa)    
Predicted Functional Partners:
PP_3608
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.541
cysNC
Sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
   
  
 0.517
qor-II
Quinone oxidoreductase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
    0.515
PP_3605
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.437
tcyP
Sodium-cystine symporter; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transport and binding proteins; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
   
  
 0.427
tusA-I
Sulfurtransferase; Function of strongly homologous gene; enzyme; Belongs to the sulfur carrier protein TusA family.
  
  
 0.416
tusA-II
Sulfurtransferase; Sulfur carrier protein which probably makes part of a sulfur- relay system; Belongs to the sulfur carrier protein TusA family.
  
  
 0.416
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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