Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_3612Putative TonB-dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor; Transport and binding proteins. (710 aa)    
Predicted Functional Partners:
PP_0862
PKHD-type hydroxylase PP_0862.
 
  
 0.775
pvdD
Non-ribosomal peptide synthetase; Function experimentally demonstrated in the studied genus; enzyme; Fattyacidandphospholipidmetabolism : Biosynthesis.
  
  
 0.623
PP_1446
TonB-dependent receptor.
  
  
 0.542
PP_3611
Homologs of previously reported genes of unknown function.
       0.482
PP_4171
Homologs of previously reported genes of unknown function.
 
  
 0.454
PP_0180
Putative cytochrome c family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
    0.424
PP_3331
Homologs of previously reported genes of unknown function.
 
  
 0.414
PP_3155
Putative Outer membrane ferric siderophore receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
0.408
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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