STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3613L-sorbosone dehydrogenase. (430 aa)    
Predicted Functional Partners:
PP_3614
Homologs of previously reported genes of unknown function; Unknown function.
 
    0.954
PP_3615
Homologs of previously reported genes of unknown function.
  
    0.557
ligD
DNA ligase D; Function of homologous gene experimentally demonstrated in an other organism; enzyme; DNAmetabolism : DNA replication, recombination, and repair.
 
    0.553
PP_0797
Homologs of previously reported genes of unknown function.
 
     0.533
gabP-I
Gamma-aminobutyrate permease; Function of homologous gene experimentally demonstrated in an other organism; transporter.
      
 0.459
gabP-IV
Gamma-aminobutyrate permease; Function of homologous gene experimentally demonstrated in an other organism; transporter.
      
 0.459
PP_4407
Putative Gamma-aminobutyrate transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
      
 0.459
ribC
Riboflavin synthase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Biosynthesisofcofactors,prostheticgroups,andcarriers : Riboflavin, FMN, and FAD.
   
  
 0.445
gabP-III
Gamma-aminobutyrate permease; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transportandbindingproteins : Carbohydrates, organic alcohols, and acids.
      
 0.433
PP_3249
Putative oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknownfunction : Enzymes of unknown specificity.
 
     0.406
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.