Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_3613L-sorbosone dehydrogenase. (430 aa)    
Predicted Functional Partners:
PP_3614
Homologs of previously reported genes of unknown function; Unknown function.
 
    0.972
PP_3615
Homologs of previously reported genes of unknown function.
       0.557
PP_0797
Homologs of previously reported genes of unknown function.
 
    0.549
ligD
DNA ligase D; Function of homologous gene experimentally demonstrated in an other organism; enzyme; DNAmetabolism : DNA replication, recombination, and repair.
 
    0.520
gabP-I
Gamma-aminobutyrate permease; Function of homologous gene experimentally demonstrated in an other organism; transporter.
      
 0.503
gabP-IV
Gamma-aminobutyrate permease; Function of homologous gene experimentally demonstrated in an other organism; transporter.
      
 0.503
PP_4407
Putative Gamma-aminobutyrate transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
      
 0.503
gabP-III
Gamma-aminobutyrate permease; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transportandbindingproteins : Carbohydrates, organic alcohols, and acids.
      
 0.429
pqqC
Pyrroloquinoline-quinone synthase; Ring cyclization and eight-electron oxidation of 3a-(2-amino- 2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline-7,9- dicarboxylic-acid to PQQ.
 
   
 0.428
yhdF
Uncharacterized oxidoreductase YhdF.
  
  
 0.405
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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