Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PP_3640Transcriptional regulator, AraC family. (306 aa)    
Predicted Functional Partners:
PP_3439
Transcriptional regulator, AraC family.
  
    0.736
PP_3639
Alkylhydroperoxidase AhpD domain protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
 
    0.736
PP_5244
Transcriptional regulator, AraC family.
  
     0.736
PP_5245
Transcriptional regulator, AraC family.
  
   0.733
PP_2430
Transcriptional regulator, AraC family.
  
    0.694
PP_2425
Putative transcriptional regulator, AraC family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
    0.684
PP_2383
Transcriptional regulator, AraC family.
  
     0.682
PP_3564
Transcriptional regulator, AraC family.
  
   0.661
PP_4511
Transcriptional regulator, AraC family.
  
     0.646
PP_1711
Transcriptional regulator, AraC family.
  
     0.618
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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