Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_3653Transporter, LysE family. (204 aa)    
Predicted Functional Partners:
PP_3565
Transporter, LysE family.
  
    0.792
PP_3025
Transporter, LysE family.
  
    0.790
PP_2388
Transporter, LysE family.
 
    0.781
PP_0699
Transporter, LysE family.
  
     0.774
PP_1248
Transporter, LysE family.
  
     0.774
PP_3021
Transporter, LysE family.
  
     0.733
PP_3652
Transporter, LysE family.
 
    
0.698
PP_3654
Leucine-responsive regulatory protein; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
     0.668
PP_3525
Homologs of previously reported genes of unknown function.
 
      0.520
PP_2039
Putative Acyl-CoA dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
      
 0.480
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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