Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_3657P-nitrobenzoate reductase NfnB. (224 aa)    
Predicted Functional Partners:
azoR1
FMN-dependent NADH-azoreductase 1; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity; Belongs to the azoreductase type 1 family.
      
 0.866
ecd
Flavoprotein; Belongs to the flavin oxidoreductase frp family.
      
 0.863
PP_2474
Glutathione S-transferase family protein; Belongs to the GST superfamily.
  
  
 0.786
PP_2489
Putative Xenobiotic reductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.773
PP_1366
Transcriptional regulator MvaT, P16 subunit.
      
 0.762
PP_4482
Transcriptional regulator, AraC family.
      
 0.762
PP_1232
Conserved exported protein of unknown function; Functions as both a chaperone and a metalloprotease. Maintains the integrity of the outer membrane by promoting either the assembly or the elimination of outer membrane proteins, depending on their folding state.
      
 0.750
PP_2478
Putative Isoquinoline 1-oxidoreductase, beta subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
     
 0.750
PP_2482
Putative Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.
      
 0.709
PP_3658
Putative Aromatic compound MFS transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.567
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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