Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_3660Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (295 aa)    
Predicted Functional Partners:
PP_4460
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.771
PP_5599
Putative transcriptional regulator, LysR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Regulatory functions; Belongs to the LysR transcriptional regulatory family.
  
     0.768
PP_0079
Putative transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.762
PP_2649
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.754
PP_5261
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.732
PP_1262
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.727
PP_2176
Transcriptional regulator, LysR family; Function of strongly homologous gene; regulator; Regulatory functions; Belongs to the LysR transcriptional regulatory family.
  
     0.719
PP_2194
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.710
PP_3661
Conserved membrane protein of unknown function, UPF0324 family; Homologs of previously reported genes of unknown function; Unknown function.
 
     0.698
PP_4522
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.644
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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