Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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[Homology]
Score
PP_3665AraC family transcriptional regulator; Function of strongly homologous gene; regulator. (335 aa)    
Predicted Functional Partners:
creA
Creatinase; Function experimentally demonstrated in the studied species; enzyme; Proteinfate : Degradation of proteins, peptides, and glycopeptides.
 
   
 0.974
PP_3022
Transcriptional regulator, AraC family.
  
   0.715
soxG
Sarcosine oxidase subunit gamma; Function experimentally demonstrated in the studied genus; enzyme; Fattyacidandphospholipidmetabolism : Degradation.
 
    0.675
soxD
Sarcosine oxidase subunit delta; Function experimentally demonstrated in the studied genus; enzyme; Fattyacidandphospholipidmetabolism : Degradation.
 
    0.667
soxA
Sarcosine oxidase subunit alpha; Function experimentally demonstrated in the studied genus; enzyme; Fattyacidandphospholipidmetabolism : Degradation; Belongs to the GcvT family.
 
     0.654
soxB
Sarcosine oxidase subunit beta; Function experimentally demonstrated in the studied genus; enzyme; Fattyacidandphospholipidmetabolism : Degradation.
  
    0.608
PP_3640
Transcriptional regulator, AraC family.
  
   0.545
pssA
CDP-diacylglycerol--serine O-phosphatidyltransferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Fattyacidandphospholipidmetabolism : Biosynthesis.
  
    0.514
dgcA
Putative dimethylglycine dehydrogenase subunit; Function experimentally demonstrated in the studied genus; putative enzyme; Fattyacidandphospholipidmetabolism : Degradation.
 
    0.472
PP_2960
Transcriptional regulator, AraC family; Function of strongly homologous gene; regulator; Regulatory functions.
  
   0.430
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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