Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_3680Homologs of previously reported genes of unknown function. (667 aa)    
Predicted Functional Partners:
PP_3681
Putative Helicase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
   
 0.960
PP_3682
Homologs of previously reported genes of unknown function.
       0.613
hsdM
Type I restriction enzyme EcoEI M protein.
  
  
 0.581
PP_3679
Homologs of previously reported genes of unknown function.
       0.465
PP_1449
Homologs of previously reported genes of unknown function.
  
     0.450
PP_2565
Putative helicase, UvrD/REP family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; DNA metabolism.
 
   
 0.450
PP_1728
Homologs of previously reported genes of unknown function.
  
    0.441
PP_0423
Homologs of previously reported genes of unknown function.
  
     0.419
PP_0693
Homologs of previously reported genes of unknown function.
 
     0.413
PP_1567
Capsid protein.
 
     0.403
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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