STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3680Homologs of previously reported genes of unknown function. (667 aa)    
Predicted Functional Partners:
PP_3681
Putative Helicase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
   
 0.955
hsdM
Type I restriction enzyme EcoEI M protein.
  
  
 0.731
hsdS
Type I restriction-modification system, S subunit.
  
  
 0.727
PP_3682
Homologs of previously reported genes of unknown function.
       0.613
PP_0080
Homologs of previously reported genes of unknown function.
   
    0.527
PP_1392
Putative NAD-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
    0.527
PP_0502
Homologs of previously reported genes of unknown function.
  
    0.489
PP_3679
Homologs of previously reported genes of unknown function.
       0.465
PP_2565
Putative helicase, UvrD/REP family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; DNA metabolism.
 
   
 0.460
PP_1449
Homologs of previously reported genes of unknown function.
  
     0.450
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.