Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_3694Homologs of previously reported genes of unknown function. (319 aa)    
Predicted Functional Partners:
PP_3697
Homologs of previously reported genes of unknown function.
  
    0.776
PP_3695
Homologs of previously reported genes of unknown function.
  
    0.775
PP_3696
Homologs of previously reported genes of unknown function.
  
    0.774
PP_3698
Homologs of previously reported genes of unknown function.
  
    0.774
PP_5622
Homologs of previously reported genes of unknown function; Unknown function.
       0.773
PP_1936
Homologs of previously reported genes of unknown function.
 
     0.634
fdoH
Formate dehydrogenase-O, beta subunit; The beta chain is an electron transfer unit containing 4 cysteine clusters involved in the formation of iron-sulfur centers.
   
    0.618
PP_3699
Homologs of previously reported genes of unknown function.
  
    0.533
PP_3693
Putative Transcriptional regulator MvaT, P16 subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.511
PP_2980
Homologs of previously reported genes of unknown function.
  
     0.490
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.