Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_3698Homologs of previously reported genes of unknown function. (499 aa)    
Predicted Functional Partners:
PP_3695
Homologs of previously reported genes of unknown function.
 
  
 0.965
PP_3697
Homologs of previously reported genes of unknown function.
 
  
 0.962
PP_3696
Homologs of previously reported genes of unknown function.
 
  
 0.959
PP_5395
Homologs of previously reported genes of unknown function.
      
 0.884
PP_2431
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
   
  
 0.866
PP_5622
Homologs of previously reported genes of unknown function; Unknown function.
     
 0.857
PP_3694
Homologs of previously reported genes of unknown function.
  
    0.774
dppA-III
Dipeptide ABC transporter - periplasmic binding protein; Function experimentally demonstrated in the studied genus; transporter; Energymetabolism : Amino acids and amines.
      
 0.768
PP_5126
Conserved protein of unknown function containing an HDOD domain; Homologs of previously reported genes of unknown function; Unknown function.
      
 0.713
PP_3453
Putative Sensor protein RstB; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
  
 0.551
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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