STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3698Homologs of previously reported genes of unknown function. (499 aa)    
Predicted Functional Partners:
PP_3697
Homologs of previously reported genes of unknown function.
 
   0.986
PP_3696
Homologs of previously reported genes of unknown function.
 
   0.985
PP_3695
Homologs of previously reported genes of unknown function.
 
  
 0.965
PP_5622
Homologs of previously reported genes of unknown function; Unknown function.
   
   0.957
PP_5395
Homologs of previously reported genes of unknown function.
   
  
 0.839
PP_2431
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
   
  
 0.837
PP_1532
Putative Phage integrase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the 'phage' integrase family.
      
 0.834
PP_3694
Homologs of previously reported genes of unknown function.
  
    0.775
dppA-III
Dipeptide ABC transporter - periplasmic binding protein; Function experimentally demonstrated in the studied genus; transporter; Energymetabolism : Amino acids and amines.
      
 0.742
gsiA
Glutathione ABC transporter ATP-binding subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transport and binding proteins; Belongs to the ABC transporter superfamily.
     
 0.656
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.