STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3712Homologs of previously reported genes of unknown function. (164 aa)    
Predicted Functional Partners:
PP_1696
Putative Membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.602
PP_3789
Putative Efflux transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.585
PP_2985
Homologs of previously reported genes of unknown function.
 
     0.523
catA-I
Catechol 1,2-dioxygenase; Function experimentally demonstrated in the studied species; enzyme; Energy metabolism.
  
    0.517
PP_3711
Diguanylate cyclase; Function of strongly homologous gene; enzyme.
  
    0.472
catC
Muconolactone Delta-isomerase; Function experimentally demonstrated in the studied species; enzyme; Energy metabolism; Belongs to the muconolactone Delta-isomerase family.
  
    0.430
catB
Muconate cycloisomerase 1; Function experimentally demonstrated in the studied species; enzyme; Energy metabolism; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
    0.404
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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