STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3717Transcriptional regulator, LuxR family. (299 aa)    
Predicted Functional Partners:
PP_3718
Putative aminotransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknownfunction : Enzymes of unknown specificity; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
    0.775
PP_3413
Sensor histidine kinase/response regulator.
   
 
 0.722
PP_3719
Putrescine-binding periplasmic protein.
  
    0.668
PP_3728
Sensor histidine kinase/response regulator.
   
 
 0.626
gacS
Sensor protein GacS.
   
 
 0.576
PP_0409
Sensory box histidine kinase.
  
 
 0.575
PP_2100
Two-component sensor protein; Function of homologous gene experimentally demonstrated in an other organism; receptor.
   
 
 0.514
PP_2742
Homologs of previously reported genes of unknown function.
  
    0.499
PP_3761
Sensor histidine kinase/response regulator.
  
 
 0.474
PP_0874
Homologs of previously reported genes of unknown function.
  
    0.465
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.