Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_3729Periplasmic amino acid-binding protein-related protein. (260 aa)    
Predicted Functional Partners:
PP_3728
Sensor histidine kinase/response regulator.
 
 
 
 0.897
aruR
Transcriptional regulatory protein AruR.
       0.773
PP_4955
Homologs of previously reported genes of unknown function.
  
     0.773
PP_0521
Homologs of previously reported genes of unknown function.
  
     0.726
PP_3731
Transcriptional regulator, TetR family.
   
   0.587
PP_4270
Homologs of previously reported genes of unknown function.
  
     0.581
PP_2403
Chemotaxis protein CheY.
       0.488
PP_0015
Putative transposon protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Mobileandextrachromosomalelementfunctions : Transposon functions.
  
     0.486
PP_5126
Conserved protein of unknown function containing an HDOD domain; Homologs of previously reported genes of unknown function; Unknown function.
  
     0.471
rocE
Amino-acid permease RocE.
       0.447
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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