STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3731Transcriptional regulator, TetR family. (214 aa)    
Predicted Functional Partners:
PP_3728
Sensor histidine kinase/response regulator.
   
 
 0.627
PP_3729
Periplasmic amino acid-binding protein-related protein.
   
   0.596
aruR
Transcriptional regulatory protein AruR.
     
 0.570
PP_3732
Enoyl-CoA hydratase/isomerase family protein.
  
    0.540
betA-II
Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.
 
  
 0.530
betA-I
Choline dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.479
PP_1949
Oxidoreductase, GMC family.
 
  
 0.471
PP_2824
Transcriptional regulator, TetR family.
  
     0.465
PP_1394
Putative Acetolactate synthase, large subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the TPP enzyme family.
 
     0.435
cbcX
Choline / betaine / carnitine ABC transporter - substrate binding protein; Function experimentally demonstrated in the studied genus; transporter.
 
     0.426
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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