STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3738Putative Transcriptional regulator VanR; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (237 aa)    
Predicted Functional Partners:
vanA
Vanillate O-demethylase oxygenase subunit; Function experimentally demonstrated in the studied species; enzyme; Biologicalprocesses : Scavenge (Catabolism).
 
   
 0.864
pcaP
Putative porin-encoding gene; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
      
 0.862
PP_5292
Catabolite repression control protein.
      
 0.834
vanB
Vanillate O-demethylase oxidoreductase; Function experimentally demonstrated in the studied species; enzyme; Biologicalprocesses : Scavenge (Catabolism).
 
   
 0.799
PP_2254
Transcriptional regulator, GntR family.
  
  
 0.789
PP_0163
Putative transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
     0.771
PP_0969
Transcriptional regulator, GntR family.
  
  
 0.766
PP_4759
Transcriptional regulator, GntR family; Function of strongly homologous gene; regulator; Regulatory functions.
  
  
 0.761
PP_4283
Transcriptional regulator, GntR family.
  
     0.755
PP_2253
Transcriptional regulator, GntR family.
  
     0.751
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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