Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_3762Response regulator. (116 aa)    
Predicted Functional Partners:
PP_3430
Sensory box histidine kinase/response regulator.
 
 
 0.828
PP_3835
Sensory box histidine kinase.
 
 
 0.823
PP_3761
Sensor histidine kinase/response regulator.
 
 
 0.740
PP_3759
Methylesterase, CheB-like.
  
  
 0.706
PP_3758
Response regulator/sensor histidine kinase.
 
 
 0.633
PP_4959
Diguanylate cyclase; Function of strongly homologous gene; enzyme.
  
 
 0.604
PP_3757
Chemotaxis protein CheY.
 
  
0.584
PP_3413
Sensor histidine kinase/response regulator.
 
 
 0.543
PP_1350
Sensory box histidine kinase/response regulator.
 
 
 0.533
PP_2100
Two-component sensor protein; Function of homologous gene experimentally demonstrated in an other organism; receptor.
 
 
 0.520
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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