STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
opdNOuter-membrane porin D; Function experimentally demonstrated in the studied genus; transporter; Transportandbindingproteins : Porins. (433 aa)    
Predicted Functional Partners:
PP_3763
Putative CobF protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.585
algK
Alginate biosynthesis protein AlgK; May be involved in the polymerization of mannuronate to alginate.
  
     0.579
PP_0886
Homologs of previously reported genes of unknown function.
  
     0.557
PP_1523
Homologs of previously reported genes of unknown function.
  
     0.550
PP_4911
Homologs of previously reported genes of unknown function.
  
     0.536
PP_5152
Homologs of previously reported genes of unknown function.
  
     0.525
PP_0938
Homologs of previously reported genes of unknown function.
  
     0.503
PP_1126
Putative Hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.499
PP_1238
Putative Lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.489
PP_5151
Homologs of previously reported genes of unknown function.
  
     0.484
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.