Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_3781Oxygen-independent Coproporphyrinogen III oxidase family protein. (471 aa)    
Predicted Functional Partners:
PP_3775
Putative sarcosine oxidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.843
oprG
Outer membrane protein OprG.
  
  
 0.763
PP_2610
Homologs of previously reported genes of unknown function.
      
 0.761
PP_3091
Homologs of previously reported genes of unknown function.
      
 0.761
PP_3084
Putative Outer membrane ferric siderophore receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
      
 0.745
liuC
methylglutaconyl-CoA hydratase; Function experimentally demonstrated in the studied species; enzyme; Fattyacidandphospholipidmetabolism : Degradation; Belongs to the enoyl-CoA hydratase/isomerase family.
      
 0.716
syrB
Syringomycin biosynthesis enzyme 2; Function experimentally demonstrated in the studied genus; enzyme; Biologicalprocesses : Construct biomass (Anabolism).
  
  
 0.693
rlmN
Dual-specificity RNA methyltransferase RlmN; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.
 
   
 0.691
PP_3782
Homologs of previously reported genes of unknown function.
  
    0.691
adhP
Short-chain alcohol dehydrogenase; Function experimentally demonstrated in the studied genus; enzyme; Energymetabolism : Anaerobic.
  
    0.688
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.