Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
syrBSyringomycin biosynthesis enzyme 2; Function experimentally demonstrated in the studied genus; enzyme; Biologicalprocesses : Construct biomass (Anabolism). (311 aa)    
Predicted Functional Partners:
PP_3782
Homologs of previously reported genes of unknown function.
  
    0.760
PP_2855
Homologs of previously reported genes of unknown function.
      
 0.704
PP_2858
Homologs of previously reported genes of unknown function.
      
 0.704
PP_4057
Conserved membrane protein of unknown function with autotransporter beta-domain; Homologs of previously reported genes of unknown function; Unknown function.
      
 0.704
PP_3781
Oxygen-independent Coproporphyrinogen III oxidase family protein.
  
  
 0.693
PP_3289
Acetyltransferase, GNAT family.
     
 0.679
PP_3232
Acetyltransferase, GNAT family.
     
 0.674
PP_3292
Homologs of previously reported genes of unknown function.
   
  
 0.658
PP_3230
Phosphoribosyl transferase domain protein.
   
  
 0.654
ccoO-I
Cytochrome c oxidase subunit, cbb3-type; Function of strongly homologous gene; enzyme.
      
 0.650
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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