STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
syrBSyringomycin biosynthesis enzyme 2; Function experimentally demonstrated in the studied genus; enzyme; Biologicalprocesses : Construct biomass (Anabolism). (311 aa)    
Predicted Functional Partners:
PP_3782
Homologs of previously reported genes of unknown function.
  
    0.761
PP_3781
Oxygen-independent Coproporphyrinogen III oxidase family protein.
  
  
 0.687
PP_3289
Acetyltransferase, GNAT family.
  
  
 0.674
PP_4752
Putative Xaa-Pro aminopeptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Proteinfate : Degradation of proteins, peptides, and glycopeptides.
     
 0.660
PP_2855
Homologs of previously reported genes of unknown function.
   
  
 0.649
PP_2858
Homologs of previously reported genes of unknown function.
      
 0.649
PP_4057
Conserved membrane protein of unknown function with autotransporter beta-domain; Homologs of previously reported genes of unknown function; Unknown function.
      
 0.649
PP_3292
Homologs of previously reported genes of unknown function.
   
  
 0.647
urtB
Putative Urea ABC transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins; Belongs to the binding-protein-dependent transport system permease family.
      
 0.646
PP_3784
Homologs of previously reported genes of unknown function.
  
    0.632
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.