STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3788Putative Non-ribosomal peptide synthetase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the ATP-dependent AMP-binding enzyme family. (517 aa)    
Predicted Functional Partners:
PP_4222
Putative SyrP protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 0.957
hemL
Glutamate-1-semialdehyde 2,1-aminomutase.
  
 
 0.940
PP_3808
Antibiotic synthesis protein MbtH.
 
 
 0.926
fabD
malonyl-CoA-ACP transacylase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Fattyacidandphospholipidmetabolism : Biosynthesis.
 
  
 0.916
PP_5628
Homologs of previously reported genes of unknown function; Unknown function.
  
 
 0.911
acs
Butyrate--CoA ligase; Function experimentally demonstrated in the studied genus; enzyme; Fatty acid and phospholipid metabolism.
 
0.908
fabF
3-oxoacyl-[acyl-carrier-protein] synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
 
  
 0.906
PP_0488
Putative NADP-dependent dehydrogenase HI_1430; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    0.902
ydfG
3-hydroxy acid dehydrogenase, NADP-dependent / malonic semialdehyde reductase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energymetabolism : Amino acids and amines.
 
    0.902
fadD-I
long-chain-fatty-acid/CoA ligase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Fattyacidandphospholipidmetabolism : Degradation.
 
0.887
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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