STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3789Putative Efflux transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (406 aa)    
Predicted Functional Partners:
aspC
Aminotransferase; Function experimentally demonstrated in the studied species; enzyme; Biologicalprocesses : Scavenge (Catabolism).
 
     0.800
PP_5628
Homologs of previously reported genes of unknown function; Unknown function.
     
 0.775
PP_3788
Putative Non-ribosomal peptide synthetase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the ATP-dependent AMP-binding enzyme family.
  
    0.774
PP_3787
Homologs of previously reported genes of unknown function.
       0.773
PP_3784
Homologs of previously reported genes of unknown function.
       0.709
PP_3785
Homologs of previously reported genes of unknown function.
       0.709
PP_3712
Homologs of previously reported genes of unknown function.
  
    0.585
dapF-2
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
       0.572
syrB
Syringomycin biosynthesis enzyme 2; Function experimentally demonstrated in the studied genus; enzyme; Biologicalprocesses : Construct biomass (Anabolism).
       0.552
PP_3782
Homologs of previously reported genes of unknown function.
       0.535
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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