STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3798Homologs of previously reported genes of unknown function. (177 aa)    
Predicted Functional Partners:
PP_3797
Homologs of previously reported genes of unknown function.
 
    0.986
PP_3800
Homologs of previously reported genes of unknown function.
  
    0.970
PP_3803
Putative Cation ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.964
PP_3799
Homologs of previously reported genes of unknown function.
  
    0.951
PP_3801
Putative Cation ABC transporter, periplasmic cation-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the bacterial solute-binding protein 9 family.
  
    0.939
PP_3802
Putative Cation ABC transporter, ATP-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.938
PP_3804
Homologs of previously reported genes of unknown function.
  
    0.923
pvdA
L-ornithine 5-monooxygenase.
  
    0.661
PP_2900
Homologs of previously reported genes of unknown function.
   
    0.604
PP_3808
Antibiotic synthesis protein MbtH.
   
    0.451
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.