Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_3804Homologs of previously reported genes of unknown function. (287 aa)    
Predicted Functional Partners:
PP_3803
Putative Cation ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.974
PP_3802
Putative Cation ABC transporter, ATP-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.973
PP_3798
Homologs of previously reported genes of unknown function.
  
    0.923
PP_3800
Homologs of previously reported genes of unknown function.
  
    0.917
PP_3801
Putative Cation ABC transporter, periplasmic cation-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the bacterial solute-binding protein 9 family.
  
    0.900
PP_3797
Homologs of previously reported genes of unknown function.
  
    0.889
PP_3799
Homologs of previously reported genes of unknown function.
  
    0.830
znuC
Zinc import ATP-binding protein; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.
  
  
 0.709
znuB
Zn(2+) ABC transporter - permease subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transportandbindingproteins : Cations and iron carrying compounds.
  
  
 0.615
pvdA
L-ornithine 5-monooxygenase.
  
  
 0.613
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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