Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PP_3822Cytochrome c family protein. (304 aa)    
Predicted Functional Partners:
PP_3823
Cytochrome c-type protein.
  
 0.971
PP_3382
Gluconate 2-dehydrogenase cytochrome c subunit; Function of strongly homologous gene; enzyme; Energy metabolism.
 
 
 0.945
adhB
Alcohol dehydrogenase cytochrome c subunit.
 
 
 0.940
PP_2677
Homologs of previously reported genes of unknown function.
    
 0.916
PP_4232
Cytochrome c family protein.
 
 
 0.910
glpE
Thiosulfate sulfurtransferase GlpE; Catalyzes, although with low efficiency, the sulfur transfer reaction from thiosulfate to cyanide.
    
 0.905
rhdA
Thiosulfate sulfurtransferase.
  
 
 0.903
sseA
Putative 3-mercaptopyruvate sulfurtransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 
 0.903
PP_2479
Cytochrome c family protein.
 
 
 0.851
PP_0718
Sulfate transporter.
  
  
 0.771
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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