STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3823Cytochrome c-type protein. (217 aa)    
Predicted Functional Partners:
PP_3822
Cytochrome c family protein.
  
 0.965
petC
Ubiquinol--cytochrome c reductase, cytochrome c1.
 
  
 0.787
petA
Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
 
  
 0.760
petB
Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
 
  
 0.745
PP_5267
Putative cytochrome c5; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier; Energy metabolism.
 
  
 0.662
PP_0125
Putative cytochrome c-type protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
 
   
 0.643
ccoO-I
Cytochrome c oxidase subunit, cbb3-type; Function of strongly homologous gene; enzyme.
 
 
 0.606
PP_3332
Putative cytochrome c-type protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
 
  
 0.594
PP_5378
Putative metal-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
 
     0.583
PP_3382
Gluconate 2-dehydrogenase cytochrome c subunit; Function of strongly homologous gene; enzyme; Energy metabolism.
  
 0.569
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.