STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3833Response regulator. (117 aa)    
Predicted Functional Partners:
PP_3835
Sensory box histidine kinase.
 
 
 0.912
PP_3728
Sensor histidine kinase/response regulator.
 
 
 0.851
PP_3413
Sensor histidine kinase/response regulator.
 
 
 0.843
PP_3453
Putative Sensor protein RstB; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
 0.818
PP_2100
Two-component sensor protein; Function of homologous gene experimentally demonstrated in an other organism; receptor.
 
 
 0.817
kinB
Alginate biosynthesis sensor protein KinB.
 
 
 0.806
pfeS-I
Histidine kinase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
 0.798
gacS
Sensor protein GacS.
 
 
 0.797
PP_3758
Response regulator/sensor histidine kinase.
 
 
 0.797
pfeS-II
Histidine kinase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
 0.795
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.