STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3849Putative calcium-binding protein, hemolysin-type; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; carrier; Cellular processes. (656 aa)    
Predicted Functional Partners:
PP_4924
Serine protease, subtilase family.
  
0.936
PP_3920
Putative Phage integrase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the 'phage' integrase family.
   
  
 0.882
PP_3066
Pyocin R2_PP, lytic enzyme.
      
 0.834
cyaB
Cyclolysin secretion/processing ATP-binding protein CyaB.
 
  
 0.824
PP_4926
HlyD family secretion protein.
 
  
 0.789
PP_1797
HlyD family secretion protein.
 
  
 0.750
prtN
Transcription regulatory protein PrtN.
   
  
 0.745
aprDA
Alkaline protease secretion transporter ATP-binding protein; Function experimentally demonstrated in the studied genus; transporter.
 
 
 0.739
hasE
Metalloprotease secretion protein.
 
  
 0.735
PP_0803
Protein secretion ABC efflux system, membrane fusion protein.
 
  
 0.636
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.