STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3857Homologs of previously reported genes of unknown function. (750 aa)    
Predicted Functional Partners:
PP_3856
Homologs of previously reported genes of unknown function.
       0.762
pvdD
Non-ribosomal peptide synthetase; Function experimentally demonstrated in the studied genus; enzyme; Fattyacidandphospholipidmetabolism : Biosynthesis.
  
    0.494
PP_3860
Phage FluMu protein gp47.
  
    0.471
peaC
Quinohemoprotein amine dehydrogenase, gamma subunit; Catalyzes the oxidative deamination of a wide range of aliphatic and aromatic amines.
   
   0.452
PP_3865
Putative Phage tail protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.426
PP_3861
Phage FluMu protein gp46.
  
    0.425
peaA
Quinohaemoprotein amine dehydrogenase, alpha subunit; Function experimentally demonstrated in the studied species; enzyme; Energymetabolism : Amino acids and amines.
  
   0.420
PP_3858
Putative Tail fiber protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.418
PP_3859
Homologs of previously reported genes of unknown function.
       0.418
PP_3862
Putative Phage assembly protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.418
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.