Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_3865Putative Phage tail protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (651 aa)    
Predicted Functional Partners:
gpD
Pyocin R2_PP, tail formation.
 
  
 0.909
gpU
Pyocin R2_PP, tail formation protein.
 
  
 0.904
gpI
Pyocin R2_PP, tail formation protein.
 
  
 0.895
PP_3864
Putative Phage FluMu DNA circulation protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
    0.888
PP_3863
Putative Phage tail protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
    0.885
PP_3862
Putative Phage assembly protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.871
gpJ
Pyocin R2_PP, baseplate/tail fiber protein.
 
  
 0.863
PP_3060
Putative tail sheath protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.
 
  
 0.863
PP_3859
Homologs of previously reported genes of unknown function.
 
   
 0.856
PP_3860
Phage FluMu protein gp47.
 
   
 0.854
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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