Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_3884Phage holin, lambda family. (107 aa)    
Predicted Functional Partners:
dnaB
Replicative DNA helicase (ATPase); Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.
   
  
 0.854
PP_3883
Putative Phage holin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.779
fdxA
Ferredoxin 1; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
      
 0.701
PP_3879
Phage portal protein, HK97 family.
  
    0.528
PP_5641
Homologs of previously reported genes of unknown function; Unknown function.
       0.519
PP_3882
Putative Phage terminase, small subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.498
PP_3881
Putative Phage terminase, large subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.497
PP_3878
Putative Phage minor capsid protein C; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.489
PP_3880
Homologs of previously reported genes of unknown function.
       0.489
PP_3875
Homologs of previously reported genes of unknown function.
  
    0.417
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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