STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3890Homologs of previously reported genes of unknown function. (147 aa)    
Predicted Functional Partners:
PP_3888
Homologs of previously reported genes of unknown function.
  
    0.790
PP_3889
Putative Phage integrase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the 'phage' integrase family.
  
    0.789
PP_3886
Homologs of previously reported genes of unknown function.
  
    0.761
PP_3887
Homologs of previously reported genes of unknown function.
  
    0.758
PP_3892
Homologs of previously reported genes of unknown function.
  
    0.513
ybcO
Homologs of previously reported genes of unknown function; extrachromosomal origin; Mobileandextrachromosomalelementfunctions : Prophage functions.
  
    0.511
PP_3894
Putative Phage replication protein O; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.488
PP_3893
Putative Phage DNA helicase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.487
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.