Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PP_3895Putative Regulatory protein Cro; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (70 aa)    
Predicted Functional Partners:
PP_3896
Transcriptional regulator, Cro/CI family.
  
  
 0.597
PP_3893
Putative Phage DNA helicase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.442
PP_3897
Homologs of previously reported genes of unknown function.
       0.434
PP_3892
Homologs of previously reported genes of unknown function.
  
    0.405
PP_3894
Putative Phage replication protein O; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.405
ybcO
Homologs of previously reported genes of unknown function; extrachromosomal origin; Mobileandextrachromosomalelementfunctions : Prophage functions.
       0.400
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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