STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3920Putative Phage integrase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the 'phage' integrase family. (349 aa)    
Predicted Functional Partners:
PP_3849
Putative calcium-binding protein, hemolysin-type; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; carrier; Cellular processes.
   
  
 0.882
PP_3066
Pyocin R2_PP, lytic enzyme.
  
   
 0.855
PP_3919
Homologs of previously reported genes of unknown function.
  
    0.808
prtN
Transcription regulatory protein PrtN.
   
  
 0.745
PP_3917
Homologs of previously reported genes of unknown function.
  
    0.649
PP_1105
Putative DNA ligase, ATP-dependent; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
  
 0.604
PP_1549
Transcriptional regulator, Cro/CI family.
  
  
 0.601
PP_3772
Repressor protein-related protein; Belongs to the peptidase S24 family.
  
  
 0.554
chpB
mRNA interferase; Function of homologous gene experimentally demonstrated in an other organism; factor; Regulatory functions.
  
   
 0.449
queA
S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).
 
   
 0.440
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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