Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_3924Homologs of previously reported genes of unknown function. (105 aa)    
Predicted Functional Partners:
PP_3923
Phosphoglycerate mutase.
       0.782
PP_1523
Homologs of previously reported genes of unknown function.
  
     0.721
sohB
Putative inner membrane peptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Proteinfate : Degradation of proteins, peptides, and glycopeptides.
       0.678
PP_3926
Short-chain dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Biologicalprocesses : Scavenge (Catabolism).
       0.675
PP_4517
Homologs of previously reported genes of unknown function; Belongs to the UPF0149 family.
  
     0.598
PP_3925
Homologs of previously reported genes of unknown function.
  
    0.523
PP_0767
Transcriptional regulator, LuxR family.
  
     0.512
pcaF-II
Beta-ketoadipyl CoA thiolase, beta component; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed.
 
   0.474
PP_2166
Anti-anti-sigma factor.
  
     0.465
PP_2013
Homologs of previously reported genes of unknown function.
  
     0.455
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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