STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3955Permease; Function of strongly homologous gene; transporter. (675 aa)    
Predicted Functional Partners:
PP_3954
Periplasmic binding subunit of unknown solute; Function of strongly homologous gene; transporter.
  
 0.991
PP_3956
Homologs of previously reported genes of unknown function.
 
    0.973
dctP
TRAP dicarboxylate transporter, DctP subunit.
  
   
 0.730
PP_1416
Putative Tricarboxylate transport protein TctA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
   
 0.671
PP_1168
Putative TRAP dicarboxylate transporter, DctQ subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
   
 0.646
PP_1418
Putative Tricarboxylate transport protein TctC; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.471
trkH-I
Potassium transporter; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family.
  
    0.470
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.