STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3959Voltage-gated chloride channel family protein. (453 aa)    
Predicted Functional Partners:
oguA
Hydroxydechloroatrazine ethylaminohydrolase; Function of strongly homologous gene; enzyme; Biologicalprocesses : Scavenge (Catabolism).
     
 0.838
PP_3209
Isoxanthopterin deaminase.
     
 0.838
PP_0241
Transporter.
      
 0.835
hutF
Probable formiminoglutamate deiminase; Function experimentally demonstrated in the studied strain; putative enzyme; Fattyacidandphospholipidmetabolism : Degradation.
  
  
 0.747
PP_2489
Putative Xenobiotic reductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
     
 0.679
xenB
Xenobiotic reductase B.
     
 0.653
PP_1478
Putative Xenobiotic reductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
     
 0.651
nhaA-II
Na(+)/H(+) antiporter NhaA 2; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family.
  
  
 0.554
PP_0496
Sodium/alanine symporter.
  
    0.526
PP_2552
DOPA decarboxylase.
  
  
 0.416
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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