Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_3987Site-specific recombinase, phage integrase family; Belongs to the 'phage' integrase family. (319 aa)    
Predicted Functional Partners:
PP_1549
Transcriptional regulator, Cro/CI family.
  
    0.607
PP_3772
Repressor protein-related protein; Belongs to the peptidase S24 family.
  
    0.562
PP_3986
Transposase.
       0.553
PP_3985
Transposase.
  
    0.527
PP_3859
Homologs of previously reported genes of unknown function.
  
    0.467
PP_2747
Homologs of previously reported genes of unknown function.
  
     0.432
aroA
3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.
  
    0.426
PP_1779
Lipopolysaccharide ABC export system, ATP-binding protein.
  
    0.425
PP_0361
Putative Competence protein ComF; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
    0.420
PP_3984
Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin; Mobileandextrachromosomalelementfunctions : Transposon functions.
       0.404
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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