STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yccASubstrate or modulator of FtsH-mediated proteolysis; Function of homologous gene experimentally demonstrated in an other organism; regulator; Transport and binding proteins; Belongs to the BI1 family. (223 aa)    
Predicted Functional Partners:
PP_2361
Putative chaperone protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
      
 0.646
rplN
50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
   
  
 0.590
htpX
Protease HtpX; Belongs to the peptidase M48B family.
  
  
 0.557
cvpA
Membrane protein required for colicin V production; Function of homologous gene experimentally demonstrated in an other organism; membrane component; Cell envelope.
  
    0.550
bamE
Outer membrane protein assembly factor BamE; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
    0.508
tusE
Sulfur transfer protein; Part of a sulfur-relay system.
     
 0.490
djlA
DnaJ-like protein DjlA.
  
     0.480
xanP
Xanthine permease; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transport and binding proteins.
  
    0.473
ftsH
Integral membrane ATP-dependent zinc metallopeptidase; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
   
  
 0.471
PP_0855
Homologs of previously reported genes of unknown function.
 
    0.466
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.