Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_3994Putative tRNA 5-methylaminomethyl-2-thiouridine synthase (tusC-like); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme; Centralintermediarymetabolism : Sulfur metabolism; Belongs to the DsrF/TusC family. (119 aa)    
Predicted Functional Partners:
tusD
Sulfur transfer protein complex, TusD subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Centralintermediarymetabolism : Sulfur metabolism.
 
 0.999
PP_3995
Homologs of previously reported genes of unknown function.
 
 0.999
tusE
Sulfur transfer protein; Part of a sulfur-relay system.
 
  
 0.984
PP_3997
Putative Glycosyl transferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
    0.932
gqr
Glutathionyl-hydroquinone reductase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Unknownfunction : Enzymes of unknown specificity.
       0.725
yccA
Substrate or modulator of FtsH-mediated proteolysis; Function of homologous gene experimentally demonstrated in an other organism; regulator; Transport and binding proteins; Belongs to the BI1 family.
  
    0.660
rdgC
Recombination-associated protein RdgC; May be involved in recombination; Belongs to the RdgC family.
  
     0.584
tusA-II
Sulfurtransferase; Sulfur carrier protein which probably makes part of a sulfur- relay system; Belongs to the sulfur carrier protein TusA family.
 
   
 0.574
xanP
Xanthine permease; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transport and binding proteins.
       0.528
tusA-I
Sulfurtransferase; Function of strongly homologous gene; enzyme; Belongs to the sulfur carrier protein TusA family.
 
   
 0.519
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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