Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pydPPutative PydP transporter, NCS1 nucleoside transporter family; Function of strongly homologous gene; transporter; Transport and binding proteins. (496 aa)    
Predicted Functional Partners:
pydA
NADP-dependent dihydropyrimidine dehydrogenase subunit PreA; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Central intermediary metabolism.
 
  
 0.929
pydX
NADP-dependent dihydropyrimidine dehydrogenase subunit; Function of strongly homologous gene; enzyme; Fattyacidandphospholipidmetabolism : Degradation.
 
  
 0.921
pydB
D-hydantoinase/dihydropyrimidinase; Function experimentally demonstrated in the studied genus; enzyme; Fattyacidandphospholipidmetabolism : Degradation.
 
  
 0.912
hyuC
N-carbamoyl-beta-alanine amidohydrolase/allantoine amidohydrolase 2; Function experimentally demonstrated in the studied species; enzyme; Fattyacidandphospholipidmetabolism : Degradation.
 
  
 0.836
PP_0353
Exonuclease.
      
 0.797
PP_0614
Putative N-carbamoyl-beta-alanine amidohydrolase/allantoine amidohydrolase 1; Function experimentally demonstrated in the studied species; putative enzyme; Fattyacidandphospholipidmetabolism : Degradation.
 
  
 0.574
PP_0269
Putative Glutamate synthase, large subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the glutamate synthase family.
      
 0.421
PP_5561
Homologs of previously reported genes of unknown function; Unknown function.
  
     0.416
plpB
NLPA lipoprotein.
      
 0.404
ibpA
Small heat shock protein IbpA; Function of homologous gene experimentally demonstrated in an other organism; factor; Cellularprocesses : Adaptations to atypical conditions; Belongs to the small heat shock protein (HSP20) family.
      
 0.402
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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