STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rutRTranscriptional regulator, TetR family; Function of strongly homologous gene; regulator; Regulatory functions. (173 aa)    
Predicted Functional Partners:
pydB
D-hydantoinase/dihydropyrimidinase; Function experimentally demonstrated in the studied genus; enzyme; Fattyacidandphospholipidmetabolism : Degradation.
  
   
 0.936
pydX
NADP-dependent dihydropyrimidine dehydrogenase subunit; Function of strongly homologous gene; enzyme; Fattyacidandphospholipidmetabolism : Degradation.
  
   
 0.878
pydA
NADP-dependent dihydropyrimidine dehydrogenase subunit PreA; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Central intermediary metabolism.
  
   
 0.878
sahR
Transcriptional regulator of methionine metabolism; Function of homologous gene experimentally demonstrated in an other organism; regulator.
   
 
 0.759
glcC
Transcriptional dual regulator GlcC-Glycolate; Function of homologous gene experimentally demonstrated in an other organism; regulator; Energy metabolism.
   
  
 0.653
PP_4040
Putative enzyme of the glyoxalase family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.531
nrdR
DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.
      
 0.506
betI
Choline-responsive transcriptional repressor BetI; Repressor involved in choline regulation of the bet genes.
  
     0.483
PP_4289
Homologs of previously reported genes of unknown function.
  
     0.461
pdhR
DNA-binding transcriptional dual regulator, LldR-L-lactate; Function experimentally demonstrated in the studied genus; regulator; Energymetabolism : Aerobic.
   
  
 0.443
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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