STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_4057Conserved membrane protein of unknown function with autotransporter beta-domain; Homologs of previously reported genes of unknown function; Unknown function. (358 aa)    
Predicted Functional Partners:
PP_2855
Homologs of previously reported genes of unknown function.
      
 0.755
PP_2858
Homologs of previously reported genes of unknown function.
      
 0.755
PP_4752
Putative Xaa-Pro aminopeptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Proteinfate : Degradation of proteins, peptides, and glycopeptides.
   
  
 0.739
urtB
Putative Urea ABC transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins; Belongs to the binding-protein-dependent transport system permease family.
   
  
 0.654
syrB
Syringomycin biosynthesis enzyme 2; Function experimentally demonstrated in the studied genus; enzyme; Biologicalprocesses : Construct biomass (Anabolism).
      
 0.649
PP_3384
Gluconate 2-dehydrogenase gamma subunit; Function of strongly homologous gene; enzyme; Energy metabolism.
      
 0.648
acoC
Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system.
      
 0.645
urtD
Putative Urea ABC transporter, ATP-binding protein; Function of homologous gene experimentally demonstrated in an other organism; putative transporter; Transport and binding proteins.
   
  
 0.595
acoB
Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta.
      
 0.589
urtC
Putative Urea ABC transporter, permease protein; Function of homologous gene experimentally demonstrated in an other organism; putative transporter; Transport and binding proteins; Belongs to the binding-protein-dependent transport system permease family.
   
  
 0.525
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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