STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_4085Putative RHS family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (1530 aa)    
Predicted Functional Partners:
PP_4084
Homologs of previously reported genes of unknown function.
  
 
 0.958
PP_3107
Homologs of previously reported genes of unknown function.
  
 
 0.899
vgrG-III
Type 6 secretion system protein; Function of strongly homologous gene; regulator.
  
 0.732
PP_4924
Serine protease, subtilase family.
 
  
 0.707
PP_5652
Conserved protein of unknown function, phage origin; Homologs of previously reported genes of unknown function; Unknown function.
       0.697
ribD
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
      
 0.645
PP_3385
Homologs of previously reported genes of unknown function.
 
  
 0.565
PP_2616
Homologs of previously reported genes of unknown function.
 
  
 0.559
PP_4077
Homologs of previously reported genes of unknown function.
 
  
 0.555
PP_3106
Homologs of previously reported genes of unknown function.
  
 0.554
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.