STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_4136Transcriptional regulator, LuxR family. (82 aa)    
Predicted Functional Partners:
PP_4647
Transcriptional regulator, LuxR family; Function of strongly homologous gene; regulator; Transcription.
 
 
 0.780
PP_4134
Homologs of previously reported genes of unknown function.
  
    0.777
PP_3413
Sensor histidine kinase/response regulator.
  
 
 0.764
PP_4135
Homologs of previously reported genes of unknown function.
  
    0.762
PP_0409
Sensory box histidine kinase.
 
 
 0.679
PP_2127
Sensor histidine kinase.
 
 
 0.663
PP_2671
Sensor histidine kinase.
 
 
 0.643
PP_3728
Sensor histidine kinase/response regulator.
  
 
 0.618
gacS
Sensor protein GacS.
  
 
 0.617
PP_2100
Two-component sensor protein; Function of homologous gene experimentally demonstrated in an other organism; receptor.
   
 
 0.559
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.