STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_4137Putative Outer membrane siderophore receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (690 aa)    
Predicted Functional Partners:
PP_3575
Outer membrane ferric siderophore receptor.
 
  
 0.647
PP_0861
Outer membrane ferric siderophore receptor; Function of strongly homologous gene; receptor; Cellularprocesses : Adaptations to atypical conditions.
 
  
 0.595
PP_3084
Putative Outer membrane ferric siderophore receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
   
 0.547
PP_2590
Outer membrane ferric siderophore receptor.
  
  
 0.545
PP_1007
Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 
 0.513
PP_2192
Putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the sigma-70 factor family.
  
 
 0.501
PP_4136
Transcriptional regulator, LuxR family.
       0.479
PP_4135
Homologs of previously reported genes of unknown function.
  
    0.476
PP_4134
Homologs of previously reported genes of unknown function.
  
    0.473
tonB
Protein TonB.
 
 
 
 0.469
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.