Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_4165Homologs of previously reported genes of unknown function. (287 aa)    
Predicted Functional Partners:
PP_4164
Alpha/beta hydrolase.
  
  
 0.949
PP_2709
Putative Long-chain-fatty-acid--CoA ligase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
 
 0.786
PP_4166
Homologs of previously reported genes of unknown function.
       0.732
PP_1218
Putative acyl-CoA thioesterase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
     
 0.584
PP_5119
Transcriptional regulator, TetR family.
  
     0.555
PP_4163
Homologs of previously reported genes of unknown function.
       0.542
PP_4162
Homologs of previously reported genes of unknown function; Unknown function.
       0.514
PP_4168
Homologs of previously reported genes of unknown function.
  
    0.505
gpsA
Glycerol-3-phosphate dehydrogenase [NAD(P)+]; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
       0.503
sixA
Phosphohistidine phosphatase SixA.
       0.498
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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