STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_4168Homologs of previously reported genes of unknown function. (115 aa)    
Predicted Functional Partners:
sixA
Phosphohistidine phosphatase SixA.
  
    0.836
gpsA
Glycerol-3-phosphate dehydrogenase [NAD(P)+]; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
  
    0.728
PP_5077
Homologs of previously reported genes of unknown function.
  
     0.668
PP_1357
Homologs of previously reported genes of unknown function; Unknown function.
  
     0.656
ycgR
Flagellar brake protein YcgR; Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)-dependent manner. Increasing levels of c-di-GMP lead to decreased motility (By similarity). Binds c-di-GMP with a dissociation constant of 165 nM. Binds 2 intercalated (c-di-GMP) dimers per subunit.
  
     0.598
PP_1503
Homologs of previously reported genes of unknown function.
  
     0.596
cyaA
Adenylate cyclase; Function experimentally demonstrated in the studied strain; enzyme.
  
    0.589
PP_0408
Homologs of previously reported genes of unknown function.
  
     0.585
PP_2083
Putative Lipase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.578
PP_4164
Alpha/beta hydrolase.
  
    0.531
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.