STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
etfBElectron transfer flavoprotein subunit beta. (249 aa)    
Predicted Functional Partners:
etfA
Electron transfer flavoprotein subunit alpha.
 0.999
PP_4203
Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.
 
 0.998
PP_0312
Electron transfer flavoprotein, alpha subunit; Function of strongly homologous gene; carrier; Energy metabolism.
 
 0.985
fadH
2,4-dienoyl-CoA reductase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Fattyacidandphospholipidmetabolism : Biosynthesis.
  
 
 0.858
PP_2869
Oxidoreductase, FMN-binding.
  
 
 0.858
hbd
3-hydroxybutyryl-CoA dehydrogenase.
  
 
 0.801
acd
Short-chain acyl-CoA dehydrogenase; Function experimentally demonstrated in the studied strain; enzyme; Biologicalprocesses : Scavenge (Catabolism).
 
 
 0.799
ivd
isovaleryl-CoA dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energymetabolism : Amino acids and amines.
 
 
 0.697
PP_3354
Putative Acyl-CoA dehydrogenase, ferrulic acid biotransformation protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
 0.693
PP_2048
Putative acyl-CoA dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.689
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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